Showing posts with label DNA. Show all posts
Showing posts with label DNA. Show all posts

Thursday, July 26, 2012

AI, Sci-Fi and Silicon


Fairly recently my buddy and I got into a discussion regarding the future of computing; specifically, Artificial Intelligence (AI). Having grown up with television shows such as (classic) “Star Trek”, I have been amazed at how reality has actually surpassed our fictional imagination regarding computer capabilities. The cell phones we routinely carry with us today far surpass the computational power of the Space Shuttle. But are we on a pathway to someday creating a real “Lt. Cmdr. Data”? Well…

The silicon micro chip and modern science fiction has suggested, perhaps somewhat mythically, that future AI might manifest itself as some type of Silicon Life Form. Unfortunately, as chemists point out, silicon as a basis for a living organism has some major drawbacks compared to carbon. Though silicon has the ability to bond with other atoms, such molecules are relatively unstable. As a result the largest silicon compound ever observed was limited to only six silicon atoms. Carbon, on the other hand, is able to produce long chains of hundreds of thousands of atoms. Large complex chains of carbon atoms have the ability to form “left-handed” versions, which build amino acids, and proteins, and “right-handed” versions which form sugars. Carbon dioxide is a gas which dissolves easily in water, whereas Silicon dioxide is a solid.

Ok, so perhaps then we could conclude that a silicon life form might exist less as a carbon-based “living” organism and instead more like a super sophisticated robot. After all computing technology is increasing inversely to size and energy requirements. Well, not so much – silicon as a substrate is soon to reach its limits of it’s capability as a substrate for micro-processing. Moore’s Law has postulated that we could expect the number of transistors on a substrate to double every couple of years. That has happened to the point where now close to 200 million transistors can be placed on a single microchip resulting in smaller processors requiring less energy. But as size drops down to the 32 to 22 nanometer range, as it will within the next two decades, quantum effects and manufacturing technology limitations hit their bottom limit. For the trend of Moore’s law to continue, silicon must be abandoned.

It is true that silicon based computing has taken us very far. Earlier this year IBM’s “Watson”, a remarkable computer that demonstrated the ability to learn and reason, had its debut competing against two of the smartest human contestants ever to appear on the TV game show “Jeopardy”. But as sophisticated as was Watson, it was “tasked” with sole purpose of competing on a game show. Without being given a question to ponder, Watson is essentially inert – not capable of creativity, imagination or any of the other emotionally driven neural processes that make the human brain such a powerful generator of abstract ‘thought’. A computer with similar capabilities of the human brain would require a hydro dam amount of electrical energy consumption to even remotely emulate.

What works better than silicon, then? It turns out – Carbon; more specifically the carbon molecules that form the DNA molecule. DNA may be the future of computing technology that takes us beyond the limits of Moore’s Law. DNA is abundant and cheap, self replicating, consumes low amounts of energy; remarkable amounts of data can be processed in amazingly small amounts of physical space.

Though they are still in their infancy, DNA computers have been around since 1994 and have been used to solve some complex mathematical problems. These natural supercomputers already exist in our bodies; research into DNA computing promises to help us unravel both the complexity of the human brain as well as usher us into the newest realm of computer technology. With the epitaph of silicon looming on the horizon, science and industry is already working to build a more compact, efficient and accurate computer which replaces the need for electrical switching with chemical bonding.

But don’t sell your Intel stock just yet.
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References and further reading:

Could Life be based on Silicon rather than Carbon?, NASA Astrobiology Institute

Where Is My Silicon-Based Life? Ask a Biogeek

Limitation Of Silicon Based Computation And Future Prospects, Shazia Hassan, Department of Computer science, The Islamia University of Bahawalpur, Punjab, Pakistan

Silicon shrinking will end about 2020, what will replace it?, Geek.Com

Is DNA Surpassing Silicon? George Klington Fernandez, St. Eugene University, Zambia

Monday, April 16, 2012

It's In our DNA

Back when I was in taking high school Biology in mid 1960’s, the discovery of the role of DNA in heredity had just been confirmed a scant few years previously in 1953. Over the previous century Darwin’s Theory of Biological Evolution was already well documented and accepted by the scientific community – a marvelous advance for its time based fundamentally on the morphology of animal species. So when I learned that every species has its own unique and identifiable genetic DNA signature, I confidently thought that the precise genetic trail of DNA lineage would drive the final nail into the coffin of Creationist beliefs. I was wrong!

Over the intervening years the specific order of genes (genome) for a huge number of species, including Homo sapiens, has been mapped. Even within our own species, we can delineate the relationship and ancestry of specific individuals beyond 99% reliability; certainly no surprise if you’ve ever had to prove paternity for child support.

DNA mapping has actually gone back and corrected errors made in the taxonomy of many plant and animal species previously classified through morphology. Beyond a doubt, DNA PROVES Biological Evolution!

Yet still today in backward countries such as Turkey, Afghanistan, Somalia and the United States of America, a large percentage of their populations still tenaciously cling to the creation stories of their assorted Holy Books; tales written back in eras when the causes of weather, disease and the movement of planets were woefully beyond the technology of humans to explain.

But it is incorrect to ascribe these archaic beliefs in a deistic cause for the origins of life to ignorance or illiteracy; some very smart and highly educated people continue to hold Creationist views, though their justifications tend to be more elaborate.

For example, Dr. Francis Collins, physician and geneticist, currently director of the National Institutes of Health and formerly head of the Human Genome Project, believes that DNA itself is proof of the existence of god. In his book, “The Language of God: A Scientist Presents Evidence for Belief”, Collins asserts that the universe was created by god 14 million years ago specifically tuned to promote life on earth. Collins believes that the development of living organisms was part of god’s plan (through the divinely created mechanisms of DNA) and that humans are unique from all the other species in ways that defy evolutionary explanations.

I must give scholars such as Collins some credit for at least attempting to reconcile scientific evidence with their beliefs; most evangelical Christian, Jewish and Muslim believers are satisfied with merely dismissing DNA and Biological Evolution as a “lie”.

I spent some time a few years ago attempting to understand why some very smart and accomplished scientists hold biblical or deistic beliefs. My father-in-law, Melvin, for example, a highly published former university Horticulture professor, is among them. I have attended lectures, debates and read their works – but I find repeatedly that when I pare away the specific elements of their arguments, one underlying theme always seems to be revealed: these folks want very earnestly the reassurance and comfort one finds in belief.

Collins’ desire for there to be a god becomes quite evident in “The Language of God” and is typical of other scientists who I have heard or read. In his book Collins asserts that “God exists because we have an innate desire for him to exist". He goes on to explain: "A duck desires to swim, so water exists. A baby desires food so food exists".

The question comes to my mind: if I don’t have the desire for god, does he/she/it therefore not exist?

I began this post essentially acknowledging what a remarkable volume of human understanding about the workings of our world has accumulated during just my lifetime. In fact, far more knowledge has been discovered during my generation than in my father’s; exponentially even more his father’s. Within only the most recent decade we have acquired a tentative understanding of how this universe actually came to be and what was likely there before the Big Bang and it’s ultimate fate.

As a friend of mine once pointed out: Every day something new is added to the body of knowledge and our understanding of the workings and origins of our universe. Yet religion, for over two millennia, has added nothing.

Resources:

“The Language of God: A Scientist Presents Evidence for Belief”, Book review by Robert Neary